IL_7OHT_025

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_025 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.249

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7OHT|1|1|G|2621
7OHT|1|1|C|2622
7OHT|1|1|G|2623
*
7OHT|1|1|C|2755
7OHT|1|1|C|2756
7OHT|1|1|U|2757

Current chains

Chain 1

25S rRNA

Nearby chains

Chain r

Ribosome biogenesis protein NSA2

Chain v

Ribosome biogenesis protein RPF2

Chain w

Regulator of ribosome biosynthesis