IL_7OHT_066

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUG*UAGUG

Length

9 nucleotides

Bulged bases

7OHT|1|1|G|1429

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_066 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3798

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

7OHT|1|1|C|1376
7OHT|1|1|G|1377
7OHT|1|1|U|1378
7OHT|1|1|G|1379
*
7OHT|1|1|U|1427
7OHT|1|1|A|1428
7OHT|1|1|G|1429
7OHT|1|1|U|1430
7OHT|1|1|G|1431

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A