IL_7OHT_067

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

7OHT|1|1|U|2410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_067 not in the Motif Atlas

Geometric match to IL_5TBW_046

Geometric discrepancy: 0.2958

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OHT|1|1|G|2409
7OHT|1|1|U|2410
7OHT|1|1|U|2411
7OHT|1|1|G|2412
*
7OHT|1|1|C|2810
7OHT|1|1|A|2811
7OHT|1|1|C|2812

Current chains

Chain 1

25S rRNA

Nearby chains