IL_7OHT_072

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGG*UUUG

Length

7 nucleotides

Bulged bases

7OHT|1|1|U|3382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHT_072 not in the Motif Atlas

Geometric match to IL_8P9A_335

Geometric discrepancy: 0.268

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

7OHT|1|1|C|3324
7OHT|1|1|G|3325
7OHT|1|1|G|3326
*
7OHT|1|1|U|3380
7OHT|1|1|U|3381
7OHT|1|1|U|3382
7OHT|1|1|G|3383

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3