IL_7OHU_069

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

7OHU|1|2|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_069 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.1978

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OHU|1|2|G|68
7OHU|1|2|U|69
*
7OHU|1|2|A|89
7OHU|1|2|U|90
7OHU|1|2|C|91

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Y

60S ribosomal protein L26-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A