IL_7OHV_054

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7OHV|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_054 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.176

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7OHV|1|1|U|1694
7OHV|1|1|U|1695
7OHV|1|1|A|1696
7OHV|1|1|A|1697
7OHV|1|1|C|1698
*
7OHV|1|1|G|1747
7OHV|1|1|G|1748
7OHV|1|1|A|1749
7OHV|1|1|A|1750
7OHV|1|1|G|1751
7OHV|1|1|A|1752

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L38