IL_7OHV_058
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGGG*CCUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHV_058 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2961
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7OHV|1|1|G|2391
7OHV|1|1|C|2392
7OHV|1|1|G|2394
7OHV|1|1|G|2395
7OHV|1|1|G|2396
*
7OHV|1|1|C|2984
7OHV|1|1|C|2985
7OHV|1|1|U|2986
7OHV|1|1|A|2987
7OHV|1|1|C|2988
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
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