IL_7OHV_073

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_073 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2989

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7OHV|1|1|A|3167
7OHV|1|1|A|3168
7OHV|1|1|U|3169
7OHV|1|1|A|3170
*
7OHV|1|1|U|3280
7OHV|1|1|U|3281
7OHV|1|1|U|3282
7OHV|1|1|U|3283

Current chains

Chain 1

25S rRNA

Nearby chains

Chain f

60S ribosomal protein L33-A