IL_7OHV_084

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

7OHV|1|1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_084 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1924

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7OHV|1|1|U|3332
7OHV|1|1|G|3333
7OHV|1|1|U|3334
7OHV|1|1|A|3335
7OHV|1|1|A|3336
7OHV|1|1|G|3337
*
7OHV|1|1|C|3367
7OHV|1|1|U|3368
7OHV|1|1|G|3369
7OHV|1|1|A|3370
7OHV|1|1|G|3371

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain u

Ribosome biogenesis protein RLP24