IL_7OHW_008

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

7OHW|1|1|A|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHW_008 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.3334

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7OHW|1|1|A|164
7OHW|1|1|A|165
7OHW|1|1|C|166
*
7OHW|1|1|G|256
7OHW|1|1|U|257

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain v

Nucleolar protein 16