IL_7OHW_014
3D structure
- PDB id
- 7OHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHW_014 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.2571
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OHW|1|1|G|404
7OHW|1|1|U|405
7OHW|1|1|G|406
7OHW|1|1|A|407
7OHW|1|1|A|408
7OHW|1|1|A|409
7OHW|1|1|U|410
*
7OHW|1|2|A|13
7OHW|1|2|C|14
7OHW|1|2|G|15
7OHW|1|2|G|16
7OHW|1|2|A|17
7OHW|1|2|U|18
7OHW|1|2|C|19
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain x
- Ribosome production factor 1
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