IL_7OHW_038

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7OHW|1|1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHW_038 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5204

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7OHW|1|1|G|1234
7OHW|1|1|U|1235
7OHW|1|1|G|1236
7OHW|1|1|G|1237
7OHW|1|1|C|1238
*
7OHW|1|1|G|1250
7OHW|1|1|A|1251
7OHW|1|1|A|1252
7OHW|1|1|U|1253
7OHW|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains