IL_7OHW_039

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OHW|1|1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHW_039 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3082

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7OHW|1|1|G|1262
7OHW|1|1|A|1263
7OHW|1|1|G|1264
7OHW|1|1|U|1265
7OHW|1|1|G|1266
*
7OHW|1|1|C|1275
7OHW|1|1|U|1276
7OHW|1|1|C|1277

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4