IL_7OHX_068

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAC*GUC

Length

7 nucleotides

Bulged bases

7OHX|1|1|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHX_068 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.3181

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OHX|1|1|G|3318
7OHX|1|1|U|3319
7OHX|1|1|A|3320
7OHX|1|1|C|3321
*
7OHX|1|1|G|3386
7OHX|1|1|U|3387
7OHX|1|1|C|3388

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3