IL_7OI0_034

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI0_034 not in the Motif Atlas

Homologous match to IL_5J7L_032

Geometric discrepancy: 0.3246

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7OI0|1|A|C|658
7OI0|1|A|U|659
*
7OI0|1|A|A|746
7OI0|1|A|A|747
7OI0|1|A|G|748

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S15