IL_7OI0_039

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI0_039 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.2101

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7OI0|1|A|C|779
7OI0|1|A|A|780
7OI0|1|A|A|781
7OI0|1|A|A|782
7OI0|1|A|C|783
*
7OI0|1|A|G|799
7OI0|1|A|G|800
7OI0|1|A|U|801
7OI0|1|A|A|802
7OI0|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains