IL_7OI6_014

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCCACAG*CCCCUUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI6_014 not in the Motif Atlas

Geometric match to IL_5XWG_002

Geometric discrepancy: 0.2921

The information below is about IL_5XWG_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74768.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OI6|1|A|C|387
7OI6|1|A|C|388
7OI6|1|A|C|389
7OI6|1|A|A|390
7OI6|1|A|C|391
7OI6|1|A|A|392
7OI6|1|A|G|393
*
7OI6|1|A|C|406
7OI6|1|A|C|407
7OI6|1|A|C|408
7OI6|1|A|C|409
7OI6|1|A|U|410
7OI6|1|A|U|411
7OI6|1|A|G|412

Current chains

Chain A

16S rRNA

Nearby chains

Chain Z

39S ribosomal protein L30, mitochondrial

Chain j

39S ribosomal protein L52, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial