IL_7OI6_031

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI6_031 not in the Motif Atlas

Homologous match to IL_7RQB_093

Geometric discrepancy: 0.2972

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7OI6|1|A|G|1273
7OI6|1|A|C|1274
7OI6|1|A|A|1275
7OI6|1|A|A|1276
*
7OI6|1|A|U|1310
7OI6|1|A|A|1311
7OI6|1|A|C|1312

Current chains

Chain A

16S rRNA

Nearby chains

Chain y

GTP-binding protein 10