IL_7OI6_032

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI6_032 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.3731

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

7OI6|1|A|A|1276
7OI6|1|A|U|1277
7OI6|1|A|C|1278
*
7OI6|1|A|G|1306
7OI6|1|A|G|1307
7OI6|1|A|U|1308
7OI6|1|A|U|1309
7OI6|1|A|U|1310

Current chains

Chain A

16S rRNA

Nearby chains

Chain y

GTP-binding protein 10