IL_7OI9_024

3D structure

PDB id

7OI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI9_024 not in the Motif Atlas

Homologous match to IL_5J7L_306

Geometric discrepancy: 0.1504

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7OI9|1|A|G|800
7OI9|1|A|G|801
7OI9|1|A|A|802
7OI9|1|A|A|803
*
7OI9|1|A|U|986
7OI9|1|A|C|987

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial