RNA 3D Hub //

7OI9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OI9_0011/A/52:59No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_7OI9_0021/A/76:82No text annotation
geometric
HL_7A0S_008
HL_76371.1
HL_7OI9_0031/A/116:121GNRA
homologous
HL_7RQB_015
NA
HL_7OI9_0041/A/161:169No text annotation
homologous
HL_7RQB_017
NA
HL_7OI9_0061/A/214:219No text annotation
geometric
HL_5TBW_006
NA
HL_7OI9_0081/A/318:326No text annotation
geometric
HL_5TBW_021
NA
HL_7OI9_0091/A/365:370No text annotation
homologous
HL_7RQB_025
NA
HL_7OI9_0111/A/437:444GNRA
homologous
HL_7A0S_026
HL_34789.1
HL_7OI9_0121/A/459:466No text annotation
homologous
HL_5J7L_160
NA
HL_7OI9_0151/A/609:616No text annotation
geometric
HL_5TBW_018
NA
HL_7OI9_0161/A/649:654UNCG
geometric
HL_4U7U_001
HL_61337.1
HL_7OI9_0181/A/730:733Mini UNCG
geometric
HL_7A0S_039
HL_90436.1
HL_7OI9_0201/A/848:862No text annotation
HL_7OI9_0231/A/1142:1150No text annotation
homologous
HL_5J7L_186
NA
HL_7OI9_0241/A/1158:1170No text annotation
HL_7OI9_0251/A/1192:1200No text annotation
geometric
HL_2ZZM_002
NA
HL_7OI9_0281/A/1484:1489No text annotation
geometric
HL_4WRT_001
HL_19413.1
HL_7OI9_0291/A/1506:1523No text annotation
geometric
HL_7A0S_074
NA
HL_7OI9_0301/A/1546:1554No text annotation
geometric
HL_7RQB_068
NA

Problematic loops

#loop idProblemSequence
HL_7OI9_005No text annotation
HL_7OI9_007Mini UNCG
HL_7OI9_010No text annotation
HL_7OI9_013No text annotation
HL_7OI9_033Pseudoknot geometry
HL_7OI9_014No text annotation
HL_7OI9_017No text annotation
HL_7OI9_019No text annotation
HL_7OI9_021No text annotation
HL_7OI9_022No text annotation
HL_7OI9_026GNRA
HL_7OI9_027GNRA
HL_7OI9_031tRNA D-loop
HL_7OI9_032Anticodon loop related

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OI9_0021/A/12:13,
1/A/98:100		Single bulged A
homologous
IL_7A0S_002
IL_14190.1
IL_7OI9_0031/A/69:75,
1/A/83:88		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_106
IL_02666.1
IL_7OI9_0041/A/175:177,
1/A/186:188		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_71625.1
IL_7OI9_0051/A/207:209,
1/A/225:227		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.1
IL_7OI9_0061/A/210:213,
1/A/220:224		No text annotation
IL_7OI9_0071/A/234:236,
1/A/346:348		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_01003.1
IL_7OI9_0081/A/236:240,
1/A/339:346		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_7OI9_0091/A/243:245,
1/A/334:336		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_7OI9_0101/A/255:257,
1/A/307:309		Isolated non-canonical cWW pair
geometric
IL_1MFQ_003
IL_01003.1
IL_7OI9_0121/A/315:317,
1/A/327:331		Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_7OI9_0131/A/376:378,
1/A/421:424		No text annotation
geometric
IL_4V84_070
NA
IL_7OI9_0141/A/387:393,
1/A/406:412		No text annotation
geometric
IL_5XWG_002
NA
IL_7OI9_0151/A/475:477,
1/A/584:585		Single bulged C
homologous
IL_5J7L_276
NA
IL_7OI9_0161/A/479:483,
1/A/578:582		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_7OI9_0201/A/636:643,
1/A/1004:1010		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_7OI9_0371/A/660:663,
1/A/771:777		No text annotation
IL_7OI9_0381/A/707:711,
1/A/741:749		No text annotation
IL_7OI9_0391/A/714:730,
1/A/733:738		No text annotation
IL_7OI9_0221/A/786:791,
1/A/996:998		No text annotation
IL_7OI9_0231/A/797:799,
1/A/988:990		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_7OI9_0241/A/800:803,
1/A/986:987		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
NA
IL_7OI9_0251/A/1042:1045,
1/A/1434:1436		No text annotation
geometric
IL_6DME_003
IL_75527.1
IL_7OI9_0271/A/1060:1062,
1/A/1259:1260		Single bulged U
homologous
IL_7RQB_080
NA
IL_7OI9_0281/A/1063:1064,
1/A/1255:1258		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7OI9_0311/A/1186:1190,
1/A/1202:1206		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_7OI9_0321/A/1445:1447,
1/A/1469:1471		Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.1
IL_7OI9_0341/A/1478:1482,
1/A/1491:1493		C-loop
geometric
IL_7RQB_104
NA

Problematic loops

#loop idProblemSequence
IL_7OI9_001No text annotation
IL_7OI9_011Single bulged A
IL_7OI9_017Isolated near basepair
IL_7OI9_018No text annotation
IL_7OI9_036No text annotation
IL_7OI9_040Single stack bend
IL_7OI9_019No text annotation
IL_7OI9_021No text annotation
IL_7OI9_026No text annotation
IL_7OI9_029Minor groove platform
IL_7OI9_030No text annotation
IL_7OI9_0338x7 Sarcin-Ricin; G-bulge
IL_7OI9_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OI9_0041/A/8:11,
1/A/101:115,
1/A/122:127		No text annotation
J3_7OI9_0011/A/245:251,
1/A/313:315,
1/A/331:334		No text annotation
homologous
J3_4WF9_002
J3_46658.1
J3_7OI9_0021/A/666:673,
1/A/753:757,
1/A/766:768		No text annotation
J3_7OI9_0031/A/673:675,
1/A/698:705,
1/A/751:753		No text annotation
J3_7OI9_0051/A/1176:1178,
1/A/1220:1230,
1/A/1239:1245		No text annotation
J4_7OI9_0011/A/644:647,
1/A/656:657,
1/A/780:783,
1/A/1001:1003		No text annotation
J4_7OI9_0021/A/666:675,
1/A/698:705,
1/A/751:757,
1/A/766:768		No text annotation
J5_7OI9_0011/A/157:159,
1/A/171:175,
1/A/188:190,
1/A/635:636,
1/A/1010:1011		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_7OI9_0021/A/195:205,
1/A/229:233,
1/A/349:352,
1/A/601:605,
1/A/620:630		No text annotation
J5_7OI9_0031/A/1067:1070,
1/A/1137:1140,
1/A/1152:1153,
1/A/1175:1176,
1/A/1245:1252		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_7OI9_0011/A/357:362,
1/A/373:374,
1/A/426:428,
1/A/453:457,
1/A/468:473,
1/A/587:596		No text annotation
J6_7OI9_0021/A/1067:1070,
1/A/1137:1140,
1/A/1152:1153,
1/A/1175:1178,
1/A/1220:1230,
1/A/1239:1252		No text annotation

Problematic loops

No problematic loops


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