IL_7OIA_008

3D structure

PDB id

7OIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7OIA|1|A|G|341, 7OIA|1|A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIA_008 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1665

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OIA|1|A|G|236
7OIA|1|A|A|237
7OIA|1|A|A|238
7OIA|1|A|A|239
7OIA|1|A|C|240
*
7OIA|1|A|G|339
7OIA|1|A|U|340
7OIA|1|A|G|341
7OIA|1|A|A|342
7OIA|1|A|U|343
7OIA|1|A|A|344
7OIA|1|A|G|345
7OIA|1|A|C|346

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial