IL_7OIA_012

3D structure

PDB id

7OIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

7OIA|1|A|A|316, 7OIA|1|A|U|328, 7OIA|1|A|A|329, 7OIA|1|A|C|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIA_012 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.1168

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7OIA|1|A|G|315
7OIA|1|A|A|316
7OIA|1|A|G|317
*
7OIA|1|A|C|327
7OIA|1|A|U|328
7OIA|1|A|A|329
7OIA|1|A|C|330
7OIA|1|A|C|331

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial