IL_7OIB_008
3D structure
- PDB id
- 7OIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7OIB|1|A|G|341, 7OIB|1|A|G|345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OIB_008 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.1836
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OIB|1|A|G|236
7OIB|1|A|A|237
7OIB|1|A|A|238
7OIB|1|A|A|239
7OIB|1|A|C|240
*
7OIB|1|A|G|339
7OIB|1|A|U|340
7OIB|1|A|G|341
7OIB|1|A|A|342
7OIB|1|A|U|343
7OIB|1|A|A|344
7OIB|1|A|G|345
7OIB|1|A|C|346
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: