IL_7OID_058

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OID_058 not in the Motif Atlas

Geometric match to IL_7A0S_003

Geometric discrepancy: 0.2935

The information below is about IL_7A0S_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7OID|1|A|U|1074
7OID|1|A|A|1075
7OID|1|A|U|1076
*
7OID|1|A|A|1132
7OID|1|A|A|1133

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

39S ribosomal protein L28, mitochondrial