IL_7OIF_135

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7OIF|1|2|A|532, 7OIF|1|2|U|534, 7OIF|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIF_135 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0827

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OIF|1|2|G|515
7OIF|1|2|PSU|516
7OIF|1|2|G|517
7OIF|1|2|C|518
7OIF|1|2|C|519
7OIF|1|2|A|520
7OIF|1|2|G|521
*
7OIF|1|2|C|528
7OIF|1|2|G|529
7OIF|1|2|G|530
7OIF|1|2|U|531
7OIF|1|2|A|532
7OIF|1|2|A|533
7OIF|1|2|U|534
7OIF|1|2|A|535
7OIF|1|2|C|536

Current chains

Chain 2

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12