IL_7OIF_148

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIF_148 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0819

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7OIF|1|2|G|887
7OIF|1|2|G|888
7OIF|1|2|A|889
7OIF|1|2|G|890
7OIF|1|2|U|891
7OIF|1|2|A|892
7OIF|1|2|C|893
7OIF|1|2|G|894
*
7OIF|1|2|U|905
7OIF|1|2|A|906
7OIF|1|2|A|907
7OIF|1|2|A|908
7OIF|1|2|A|909
7OIF|1|2|C|910

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12