IL_7OIG_016

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7OIG|1|1|G|801, 7OIG|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0799

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OIG|1|1|G|674
7OIG|1|1|A|675
7OIG|1|1|A|676
7OIG|1|1|A|677
7OIG|1|1|C|678
*
7OIG|1|1|G|799
7OIG|1|1|A|800
7OIG|1|1|G|801
7OIG|1|1|A|802
7OIG|1|1|U|803
7OIG|1|1|A|804
7OIG|1|1|G|805
7OIG|1|1|C|806

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15