IL_7OIG_136

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7OIG|1|2|A|532, 7OIG|1|2|U|534, 7OIG|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_136 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0848

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7OIG|1|2|G|515
7OIG|1|2|PSU|516
7OIG|1|2|G|517
7OIG|1|2|C|518
7OIG|1|2|C|519
7OIG|1|2|A|520
7OIG|1|2|G|521
*
7OIG|1|2|C|528
7OIG|1|2|G|529
7OIG|1|2|G|530
7OIG|1|2|U|531
7OIG|1|2|A|532
7OIG|1|2|A|533
7OIG|1|2|U|534
7OIG|1|2|A|535
7OIG|1|2|C|536

Current chains

Chain 2

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12