IL_7OIG_196

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_196 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0867

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OIG|1|2|A|673
7OIG|1|2|G|674
7OIG|1|2|A|675
7OIG|1|2|A|676
7OIG|1|2|U|677
*
7OIG|1|2|G|713
7OIG|1|2|G|714
7OIG|1|2|A|715
7OIG|1|2|A|716
7OIG|1|2|U|717

Current chains

Chain 2

16S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain j

30S ribosomal protein S6

Chain o

30S ribosomal protein S11

Chain v

30S ribosomal protein S18

Chain y

30S ribosomal protein S21