3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OII_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0769
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7OII|1|1|C|239
7OII|1|1|C|240
7OII|1|1|A|241
7OII|1|1|G|242
7OII|1|1|U|243
7OII|1|1|A|244
7OII|1|1|G|245
*
7OII|1|1|C|253
7OII|1|1|G|254
7OII|1|1|A|255
7OII|1|1|A|256
7OII|1|1|C|257
7OII|1|1|G|258

Current chains

Chain 1
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L15
Chain d
50S ribosomal protein L35

Coloring options:


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