IL_7OII_133

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OII_133 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1385

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7OII|1|2|G|450
7OII|1|2|A|451
7OII|1|2|A|452
7OII|1|2|G|453
7OII|1|2|G|454
7OII|1|2|G|455
*
7OII|1|2|C|477
7OII|1|2|A|478
7OII|1|2|U|479
7OII|1|2|U|480
7OII|1|2|G|481
7OII|1|2|A|482
7OII|1|2|C|483

Current chains

Chain 2

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S16