IL_7OIZ_080

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7OIZ|1|a|G|801, 7OIZ|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_080 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0825

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OIZ|1|a|G|674
7OIZ|1|a|A|675
7OIZ|1|a|A|676
7OIZ|1|a|A|677
7OIZ|1|a|C|678
*
7OIZ|1|a|G|799
7OIZ|1|a|A|800
7OIZ|1|a|G|801
7OIZ|1|a|A|802
7OIZ|1|a|U|803
7OIZ|1|a|A|804
7OIZ|1|a|G|805
7OIZ|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15