IL_7OIZ_146

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_146 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.1316

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7OIZ|1|a|A|2297
7OIZ|1|a|A|2298
7OIZ|1|a|U|2299
*
7OIZ|1|a|A|2317
7OIZ|1|a|G|2318
7OIZ|1|a|G|2319
7OIZ|1|a|U|2320
7OIZ|1|a|U|2321

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

Small subunit ribosomal RNA fragment; SSU rRNA fragment

Chain f

50S ribosomal protein L5