IL_7OIZ_180

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OIZ|1|a|U|1851
7OIZ|1|a|U|1852
7OIZ|1|a|A|1853
7OIZ|1|a|A|1854
7OIZ|1|a|U|1855
7OIZ|1|a|U|1856
7OIZ|1|a|G|1857
7OIZ|1|a|A|1858
7OIZ|1|a|U|1859
7OIZ|1|a|G|1860
*
7OIZ|1|a|U|1882
7OIZ|1|a|U|1883
7OIZ|1|a|G|1884
7OIZ|1|a|A|1885
7OIZ|1|a|U|1886
7OIZ|1|a|C|1887
7OIZ|1|a|G|1888
7OIZ|1|a|A|1889
7OIZ|1|a|A|1890
7OIZ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains