IL_7OJ0_012

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7OJ0|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1245

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7OJ0|1|A|G|147
7OJ0|1|A|G|148
7OJ0|1|A|A|149
7OJ0|1|A|U|150
7OJ0|1|A|A|151
7OJ0|1|A|A|152
7OJ0|1|A|C|153
*
7OJ0|1|A|G|168
7OJ0|1|A|C|169
7OJ0|1|A|U|170
7OJ0|1|A|A|171
7OJ0|1|A|A|172
7OJ0|1|A|U|173
7OJ0|1|A|A|174
7OJ0|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20