IL_7OJ0_020

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_020 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.1766

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7OJ0|1|A|C|440
7OJ0|1|A|A|441
7OJ0|1|A|G|442
*
7OJ0|1|A|C|492
7OJ0|1|A|A|493
7OJ0|1|A|G|494
7OJ0|1|A|A|495
7OJ0|1|A|A|496
7OJ0|1|A|G|497

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4