3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
7OJ0|1|A|A|532, 7OJ0|1|A|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OJ0_024 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1302
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7OJ0|1|A|G|515
7OJ0|1|A|PSU|516
7OJ0|1|A|G|517
7OJ0|1|A|C|518
7OJ0|1|A|C|519
7OJ0|1|A|A|520
7OJ0|1|A|G|521
*
7OJ0|1|A|C|528
7OJ0|1|A|G|529
7OJ0|1|A|G|530
7OJ0|1|A|U|531
7OJ0|1|A|A|532
7OJ0|1|A|A|533
7OJ0|1|A|U|534
7OJ0|1|A|A|535
7OJ0|1|A|C|536

Current chains

Chain A
16S rRNA

Nearby chains

Chain 6
Alternative ribosome-rescue factor A
Chain 8
Peptide chain release factor RF2
Chain C
30S ribosomal protein S3
Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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