IL_7OJ0_056

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7OJ0|1|A|C|1400, 7OJ0|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_056 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1304

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7OJ0|1|A|C|1399
7OJ0|1|A|C|1400
7OJ0|1|A|G|1401
*
7OJ0|1|A|C|1501
7OJ0|1|A|A|1502
7OJ0|1|A|A|1503
7OJ0|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain 8

Peptide chain release factor RF2

Chain V

Transfer RNA; tRNA

Chain X

mRNA