IL_7OJ0_071

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_071 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0944

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OJ0|1|a|C|239
7OJ0|1|a|C|240
7OJ0|1|a|A|241
7OJ0|1|a|G|242
7OJ0|1|a|U|243
7OJ0|1|a|A|244
7OJ0|1|a|G|245
*
7OJ0|1|a|C|253
7OJ0|1|a|G|254
7OJ0|1|a|A|255
7OJ0|1|a|A|256
7OJ0|1|a|C|257
7OJ0|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15