3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UAG*CAAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OJ0_074 not in the Motif Atlas
Homologous match to IL_5J7L_254
Geometric discrepancy: 0.1121
The information below is about IL_5J7L_254
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.3
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

7OJ0|1|a|U|293
7OJ0|1|a|A|294
7OJ0|1|a|G|295
*
7OJ0|1|a|C|343
7OJ0|1|a|A|344
7OJ0|1|a|A|345
7OJ0|1|a|A|346
7OJ0|1|a|A|347

Current chains

Chain a
23S rRNA

Nearby chains

Chain t
50S ribosomal protein L24

Coloring options:


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