IL_7OJ0_078

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_078 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1253

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7OJ0|1|a|U|606
7OJ0|1|a|U|607
7OJ0|1|a|A|608
7OJ0|1|a|A|609
7OJ0|1|a|C|610
*
7OJ0|1|a|G|618
7OJ0|1|a|G|619
7OJ0|1|a|G|620
7OJ0|1|a|A|621
7OJ0|1|a|G|622

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15