IL_7OJ0_159

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_159 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3625

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7OJ0|1|a|G|2588
7OJ0|1|a|A|2589
7OJ0|1|a|A|2590
7OJ0|1|a|C|2591
*
7OJ0|1|a|G|2603
7OJ0|1|a|PSU|2604
7OJ0|1|a|PSU|2605
7OJ0|1|a|C|2606

Current chains

Chain a

23S rRNA

Nearby chains

Chain 8

Peptide chain release factor RF2

Chain V

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2