IL_7OJ0_178
3D structure
- PDB id
- 7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGU(5MC)*GUCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OJ0_178 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.2481
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OJ0|1|A|C|1404
7OJ0|1|A|G|1405
7OJ0|1|A|U|1406
7OJ0|1|A|5MC|1407
*
7OJ0|1|A|G|1494
7OJ0|1|A|U|1495
7OJ0|1|A|C|1496
7OJ0|1|A|G|1497
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 6
- Alternative ribosome-rescue factor A
- Chain 8
- Peptide chain release factor RF2
- Chain V
- Transfer RNA; tRNA
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: