IL_7OJ0_184

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OJ0|1|a|U|1851
7OJ0|1|a|U|1852
7OJ0|1|a|A|1853
7OJ0|1|a|A|1854
7OJ0|1|a|U|1855
7OJ0|1|a|U|1856
7OJ0|1|a|G|1857
7OJ0|1|a|A|1858
7OJ0|1|a|U|1859
7OJ0|1|a|G|1860
*
7OJ0|1|a|U|1882
7OJ0|1|a|U|1883
7OJ0|1|a|G|1884
7OJ0|1|a|A|1885
7OJ0|1|a|U|1886
7OJ0|1|a|C|1887
7OJ0|1|a|G|1888
7OJ0|1|a|A|1889
7OJ0|1|a|A|1890
7OJ0|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains