IL_7OLC_009

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_009 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2538

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7OLC|1|1|A|155
7OLC|1|1|G|156
*
7OLC|1|1|C|253
7OLC|1|1|U|254
7OLC|1|1|U|255

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36