IL_7OLC_026

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CGCAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_026 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.192

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OLC|1|1|A|713
7OLC|1|1|G|714
7OLC|1|1|A|715
7OLC|1|1|G|716
*
7OLC|1|1|C|723
7OLC|1|1|G|724
7OLC|1|1|C|725
7OLC|1|1|A|726
7OLC|1|1|U|727

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein

Chain Lb

60S ribosomal protein L29