IL_7OLC_064

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_064 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1531

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7OLC|1|1|G|1475
7OLC|1|1|G|1476
7OLC|1|1|U|1477
7OLC|1|1|U|1478
*
7OLC|1|1|A|1815
7OLC|1|1|C|1816

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LX

60S ribosomal protein L25-like protein

Chain Lg

Ribosomal protein l34-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

eL39