IL_7OLC_065

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GGA

Length

8 nucleotides

Bulged bases

7OLC|1|1|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_065 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.376

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7OLC|1|1|U|1484
7OLC|1|1|G|1485
7OLC|1|1|A|1486
7OLC|1|1|A|1487
7OLC|1|1|C|1488
*
7OLC|1|1|G|1496
7OLC|1|1|G|1497
7OLC|1|1|A|1498

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ll

eL39