IL_7OLC_076

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7OLC|1|1|G|1731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_076 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.1252

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7OLC|1|1|U|1674
7OLC|1|1|U|1675
7OLC|1|1|A|1676
7OLC|1|1|A|1677
7OLC|1|1|C|1678
*
7OLC|1|1|G|1727
7OLC|1|1|G|1728
7OLC|1|1|A|1729
7OLC|1|1|A|1730
7OLC|1|1|G|1731
7OLC|1|1|A|1732

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38-like protein